BUG #13633: ERROR: invalid memory alloc request size

The following bug has been logged on the website:

Bug reference: 13633
Logged by: Andreas Hauser
Email address: andreas-postgresql(at)creative-memory(dot)de
PostgreSQL version: 9.5alpha2
Operating system: openSUSE 12.2 (x86_64)
Description:

SELECT G.MarkerID,G.Allel1,G.Allel2, count (G.TierLIDint) as nH
FROM GenotypHD as G, TiereInSets as TS, Marker as M
WHERE TS.TierSetID='HD.09.15' and TS.TierLIDint=G.TierLIDint and
M.Version='3' and M.MarkerID=G.MarkerID and G.Allel1<>G.Allel2
GROUP BY G.MarkerID,G.Allel1,G.Allel2;

ERROR: invalid memory alloc request size 1073741824

EXPLAIN:
QUERY PLAN

---------------------------------------------------------------------------------------------------------
HashAggregate (cost=49845576.86..50041694.10 rows=19611724 width=26)
Group Key: g.markerid, g.allel1, g.allel2
-> Hash Join (cost=38473815.11..48892997.85 rows=95257901 width=26)
Hash Cond: (m.markerid = g.markerid)
-> Seq Scan on marker m (cost=0.00..29420.53 rows=777683
width=18)
Filter: (version = '3'::smallint)
-> Hash (cost=37266606.89..37266606.89 rows=96576658 width=26)
-> Hash Join (cost=34061077.42..37266606.89 rows=96576658
width=26)
Hash Cond: (ts.tierlidint = g.tierlidint)
-> Seq Scan on tiereinsets ts (cost=0.00..3611.29
rows=993 width=4)
Filter: (tiersetid = 'HD.09.15'::text)
-> Hash (cost=24041909.00..24041909.00 rows=801533474
width=26)
-> Seq Scan on genotyphd g
(cost=0.00..24041909.00 rows=801533474 width=26)
Filter: (allel1 <> allel2)

installed from source with ./configure --prefix:
# select version();
version

----------------------------------------------------------------------------------------------------------------------------------------
PostgreSQL 9.5alpha2 on x86_64-unknown-linux-gnu, compiled by gcc (SUSE
Linux) 4.7.1 20120723 [gcc-4_7-branch revision 189773], 64-bit

$ locale
LANG=de_DE.utf-8
LC_CTYPE="de_DE.utf-8"
LC_NUMERIC="de_DE.utf-8"
LC_TIME="de_DE.utf-8"
LC_COLLATE=C
LC_MONETARY="de_DE.utf-8"
LC_MESSAGES=C
LC_PAPER="de_DE.utf-8"
LC_NAME="de_DE.utf-8"
LC_ADDRESS="de_DE.utf-8"
LC_TELEPHONE="de_DE.utf-8"
LC_MEASUREMENT="de_DE.utf-8"
LC_IDENTIFICATION="de_DE.utf-8"
LC_ALL=

--
-- PostgreSQL database cluster dump
--

SET default_transaction_read_only = off;

SET client_encoding = 'UTF8';
SET standard_conforming_strings = on;

--
-- Roles
--

CREATE ROLE andy;
ALTER ROLE andy WITH SUPERUSER INHERIT CREATEROLE CREATEDB LOGIN REPLICATION
BYPASSRLS;

--
-- Database creation
--

CREATE DATABASE andy WITH TEMPLATE = template0 OWNER = andy;
CREATE DATABASE "snpDB" WITH TEMPLATE = template0 OWNER = andy;
REVOKE ALL ON DATABASE template1 FROM PUBLIC;
REVOKE ALL ON DATABASE template1 FROM andy;
GRANT ALL ON DATABASE template1 TO andy;
GRANT CONNECT ON DATABASE template1 TO PUBLIC;

\connect andy

SET default_transaction_read_only = off;

--
-- PostgreSQL database dump
--

-- Dumped from database version 9.5alpha2
-- Dumped by pg_dump version 9.5alpha2

SET statement_timeout = 0;
SET lock_timeout = 0;
SET client_encoding = 'UTF8';
SET standard_conforming_strings = on;
SET check_function_bodies = false;
SET client_min_messages = warning;
SET row_security = off;

--
-- Name: plpgsql; Type: EXTENSION; Schema: -; Owner:
--

CREATE EXTENSION IF NOT EXISTS plpgsql WITH SCHEMA pg_catalog;

--
-- Name: EXTENSION plpgsql; Type: COMMENT; Schema: -; Owner:
--

COMMENT ON EXTENSION plpgsql IS 'PL/pgSQL procedural language';

--
-- Name: public; Type: ACL; Schema: -; Owner: andy
--

REVOKE ALL ON SCHEMA public FROM PUBLIC;
REVOKE ALL ON SCHEMA public FROM andy;
GRANT ALL ON SCHEMA public TO andy;
GRANT ALL ON SCHEMA public TO PUBLIC;

--
-- PostgreSQL database dump complete
--

\connect postgres

SET default_transaction_read_only = off;

--
-- PostgreSQL database dump
--

-- Dumped from database version 9.5alpha2
-- Dumped by pg_dump version 9.5alpha2

SET statement_timeout = 0;
SET lock_timeout = 0;
SET client_encoding = 'UTF8';
SET standard_conforming_strings = on;
SET check_function_bodies = false;
SET client_min_messages = warning;
SET row_security = off;

--
-- Name: postgres; Type: COMMENT; Schema: -; Owner: andy
--

COMMENT ON DATABASE postgres IS 'default administrative connection
database';

--
-- Name: plpgsql; Type: EXTENSION; Schema: -; Owner:
--

CREATE EXTENSION IF NOT EXISTS plpgsql WITH SCHEMA pg_catalog;

--
-- Name: EXTENSION plpgsql; Type: COMMENT; Schema: -; Owner:
--

COMMENT ON EXTENSION plpgsql IS 'PL/pgSQL procedural language';

--
-- Name: public; Type: ACL; Schema: -; Owner: andy
--

REVOKE ALL ON SCHEMA public FROM PUBLIC;
REVOKE ALL ON SCHEMA public FROM andy;
GRANT ALL ON SCHEMA public TO andy;
GRANT ALL ON SCHEMA public TO PUBLIC;

--
-- PostgreSQL database dump complete
--

\connect "snpDB"

SET default_transaction_read_only = off;

--
-- PostgreSQL database dump
--

-- Dumped from database version 9.5alpha2
-- Dumped by pg_dump version 9.5alpha2

SET statement_timeout = 0;
SET lock_timeout = 0;
SET client_encoding = 'UTF8';
SET standard_conforming_strings = on;
SET check_function_bodies = false;
SET client_min_messages = warning;
SET row_security = off;

--
-- Name: plpgsql; Type: EXTENSION; Schema: -; Owner:
--

CREATE EXTENSION IF NOT EXISTS plpgsql WITH SCHEMA pg_catalog;

--
-- Name: EXTENSION plpgsql; Type: COMMENT; Schema: -; Owner:
--

COMMENT ON EXTENSION plpgsql IS 'PL/pgSQL procedural language';

SET search_path = public, pg_catalog;

SET default_tablespace = '';

SET default_with_oids = false;

--
-- Name: genotyphd; Type: TABLE; Schema: public; Owner: andy
--

CREATE TABLE genotyphd (
tierlid text NOT NULL,
markerid text NOT NULL,
gst text NOT NULL,
allel1 text,
allel2 text,
commentid smallint,
tierlidint integer
);

ALTER TABLE genotyphd OWNER TO andy;

--
-- Name: marker; Type: TABLE; Schema: public; Owner: andy
--

CREATE TABLE marker (
markerid text NOT NULL,
version smallint NOT NULL,
chr text,
pos integer,
a1 character(1),
a2 character(1),
topseq text,
forallel1 character(1),
forallel2 character(1),
forseq text,
aa text,
comentar text
);

ALTER TABLE marker OWNER TO andy;

--
-- Name: tiereinsets; Type: TABLE; Schema: public; Owner: andy
--

CREATE TABLE tiereinsets (
tierid text NOT NULL,
tst text NOT NULL,
tiersetid text NOT NULL,
tierlid text NOT NULL,
familie text NOT NULL,
tierlidint integer
);

ALTER TABLE tiereinsets OWNER TO andy;

--
-- Name: tierlid; Type: TABLE; Schema: public; Owner: andy
--

CREATE TABLE tierlid (
tierlidint integer NOT NULL,
tierlid text
);

ALTER TABLE tierlid OWNER TO andy;

--
-- Name: tierlid_tierlidint_seq; Type: SEQUENCE; Schema: public; Owner:
andy
--

CREATE SEQUENCE tierlid_tierlidint_seq
START WITH 1
INCREMENT BY 1
NO MINVALUE
NO MAXVALUE
CACHE 1;

ALTER TABLE tierlid_tierlidint_seq OWNER TO andy;

--
-- Name: tierlid_tierlidint_seq; Type: SEQUENCE OWNED BY; Schema: public;
Owner: andy
--

ALTER SEQUENCE tierlid_tierlidint_seq OWNED BY tierlid.tierlidint;

--
-- Name: tierlidint; Type: DEFAULT; Schema: public; Owner: andy
--

ALTER TABLE ONLY tierlid ALTER COLUMN tierlidint SET DEFAULT
nextval('tierlid_tierlidint_seq'::regclass);

--
-- Name: pk_genotyphd; Type: CONSTRAINT; Schema: public; Owner: andy
--

ALTER TABLE ONLY genotyphd
ADD CONSTRAINT pk_genotyphd PRIMARY KEY (tierlid, markerid, gst);

--
-- Name: pk_markerseq_1; Type: CONSTRAINT; Schema: public; Owner: andy
--

ALTER TABLE ONLY marker
ADD CONSTRAINT pk_markerseq_1 PRIMARY KEY (markerid, version);

--
-- Name: pk_tiereinsets; Type: CONSTRAINT; Schema: public; Owner: andy
--

ALTER TABLE ONLY tiereinsets
ADD CONSTRAINT pk_tiereinsets PRIMARY KEY (tierid, tst, tiersetid,
tierlid, familie);

--
-- Name: tierlid_pkey; Type: CONSTRAINT; Schema: public; Owner: andy
--

ALTER TABLE ONLY tierlid
ADD CONSTRAINT tierlid_pkey PRIMARY KEY (tierlidint);

--
-- Name: tierlid_tierlid_key; Type: CONSTRAINT; Schema: public; Owner: andy
--

ALTER TABLE ONLY tierlid
ADD CONSTRAINT tierlid_tierlid_key UNIQUE (tierlid);

--
-- Name: genotyphd_tierlidint_fkey; Type: FK CONSTRAINT; Schema: public;
Owner: andy
--

ALTER TABLE ONLY genotyphd
ADD CONSTRAINT genotyphd_tierlidint_fkey FOREIGN KEY (tierlidint)
REFERENCES tierlid(tierlidint) ON DELETE RESTRICT;

--
-- Name: tiereinsets_tierlidint_fkey; Type: FK CONSTRAINT; Schema: public;
Owner: andy
--

ALTER TABLE ONLY tiereinsets
ADD CONSTRAINT tiereinsets_tierlidint_fkey FOREIGN KEY (tierlidint)
REFERENCES tierlid(tierlidint) ON DELETE RESTRICT;

--
-- Name: public; Type: ACL; Schema: -; Owner: andy
--

REVOKE ALL ON SCHEMA public FROM PUBLIC;
REVOKE ALL ON SCHEMA public FROM andy;
GRANT ALL ON SCHEMA public TO andy;
GRANT ALL ON SCHEMA public TO PUBLIC;

--
-- PostgreSQL database dump complete
--

\connect template1

SET default_transaction_read_only = off;

--
-- PostgreSQL database dump
--

-- Dumped from database version 9.5alpha2
-- Dumped by pg_dump version 9.5alpha2

SET statement_timeout = 0;
SET lock_timeout = 0;
SET client_encoding = 'UTF8';
SET standard_conforming_strings = on;
SET check_function_bodies = false;
SET client_min_messages = warning;
SET row_security = off;

--
-- Name: template1; Type: COMMENT; Schema: -; Owner: andy
--

COMMENT ON DATABASE template1 IS 'default template for new databases';

--
-- Name: plpgsql; Type: EXTENSION; Schema: -; Owner:
--

CREATE EXTENSION IF NOT EXISTS plpgsql WITH SCHEMA pg_catalog;

--
-- Name: EXTENSION plpgsql; Type: COMMENT; Schema: -; Owner:
--

COMMENT ON EXTENSION plpgsql IS 'PL/pgSQL procedural language';

--
-- Name: public; Type: ACL; Schema: -; Owner: andy
--

REVOKE ALL ON SCHEMA public FROM PUBLIC;
REVOKE ALL ON SCHEMA public FROM andy;
GRANT ALL ON SCHEMA public TO andy;
GRANT ALL ON SCHEMA public TO PUBLIC;

--
-- PostgreSQL database dump complete
--

--
-- PostgreSQL database cluster dump complete
--